MmuEX6090918 @ mm10
Exon Skipping
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110287582-110289961:-
Coord C1 exon
chr11:110289791-110289961
Coord A exon
chr11:110288063-110288176
Coord C2 exon
chr11:110287582-110287716
Length
114 bp
Sequences
Splice sites
3' ss Seq
CATGTGTTTCTGATTTCCAGGTG
3' ss Score
10.91
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATCAAAGCTTATACTCAACTTAAACTTTCGGGTCTTTTGCCATCAGCCTATTGGGTTGGACAAGCTGTTGTGGATATTCCCTTGTTTTTTGTTGTTCTGATTTTGATGCTGGGAAGTTTATTTGCATTTCATCATGGACTGTATTTTTATCCTGCAAAATTTCTTGCTGTG
Seq A exon
GTGTTTTGCCTCATTGCTTATGTGCCCTCCGTCATTCTGTTCACGTACATAGCTTCGTTCACTTTCAAGAAAATTTTAAATACCAAGGAATTTTGGTCATTTATCTATTCTGTG
Seq C2 exon
ACCGCATTGGCTTGTGTGGCAATCACGGAAACAACTTTCTTTCTGCAATATGCAGTTACGGCTGTCTTTCATTACACCTTCTGCATAGCCATTCCAATCTACCCTCTCCTGGGTTGTCTGATTTCTTTCATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-'36-37,'36-36,38-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(15.3=100)
A:
PF126982=ABC2_membrane_3=FE(10.1=100)
C2:
PF126982=ABC2_membrane_3=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATCAGCCTATTGGGTTG
R:
CCCAGGAGAGGGTAGATTGGA
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types