DreEX6075131 @ danRer10
Exon Skipping
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6181704-6186655:-
Coord C1 exon
chr15:6186509-6186655
Coord A exon
chr15:6183667-6183822
Coord C2 exon
chr15:6181704-6181837
Length
156 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTTTGTGTGTTGCAGAGC
3' ss Score
9.96
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTCCCAGTCGCCCACCTGAAAACGTTGTGACCACAGCTACGACCCCTGAGACCATCTCTCTGTCATGGTCTGCACTGCCCAAAGAAGCCCTCAACGGCATGCTGCTCGGATACCGTGTCATCTTCTGGGCCAACCTACCTGATGGAG
Seq A exon
AGCTGGGAGAGATCAGGAACATCACTACCACCAAGCCTTCGCTGGAGTTGGAGCGGCTGGAAAAATACACCAACTACAGTATCCAGGTGCTGGCCTTCACTCGAGCTGGAGATGGAGTTCGTAGTGAGCAGATCTACACACGTACCAAAGAGGATG
Seq C2 exon
TTCCTGGCCCTCCGGCTGGAGTTAAGGCTGCTGCTTCCACAAGCTCGGTGGTGTTTGTTTCCTGGCTGCCACCACACAAGCTCAACGGGATCATCAGGAAATACATCGTCTTCTGTTCCAACCCTTACCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.219 C2=0.111
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(52.3=92.0)
A:
PF0004116=fn3=PD(46.6=77.4)
C2:
PF0004116=fn3=PU(50.0=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGACCACAGCTACGACC
R:
TGGGGTAAGGGTTGGAACAGA
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]