MmuEX6063653 @ mm9
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96895272-96905473:-
Coord C1 exon
chr16:96905327-96905473
Coord A exon
chr16:96899991-96900146
Coord C2 exon
chr16:96895272-96895405
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTCTGGTTTTTGTCCTCCAGAGC
3' ss Score
9.19
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
TACCCAGCTACCCTCCTGAAAATGTCCAAGCCATAGCAACCTCACCAGAAAGCATATCAATCTCCTGGTCCACACTGTCCAAGGAGGCCTTGAATGGGATTCTCCAGGGGTTCAGGGTCATCTACTGGGCCAACCTCATAGACGGAG
Seq A exon
AGCTGGGCGAGATTAAGAACGTCACCACCACGCAGCCTTCCTTGGAGTTGGATGGACTAGAGAAATACACCAACTACAGTATCCAGGTCCTGGCCTTCACCCGTGCAGGGGATGGCGTCCGGAGCGAGCAGATCTTTACCCGTACCAAGGAGGACG
Seq C2 exon
TTCCAGGTCCTCCTGCCGGTGTCAAGGCGGCGGCAGCCTCGGCCTCCATGGTCTTCGTGTCCTGGCTGCCCCCGCTGAAGCTGAACGGCATCATTCGGAAGTACACAGTGTTCTGCTCCCATCCCTACCCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'20-18,'20-17,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.170 C2=0.044
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(52.3=92.0)
A:
PF0004116=fn3=PD(46.6=77.4)
C2:
PF0004116=fn3=PU(50.0=93.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATAGCAACCTCACCAGA
R:
GGATGGGAGCAGAACACTGTG
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: