GgaEX1021051 @ galGal4
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107672357-107683174:-
Coord C1 exon
chr1:107683028-107683174
Coord A exon
chr1:107681135-107681290
Coord C2 exon
chr1:107672357-107672490
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATTTCCTTCTTATTCTATAGAGC
3' ss Score
9.61
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TTCCCAGCTGCCCTCCAGGGAACGTGCAAGCCACTGCCACATCACCAGAAACCATTTCTATTTCTTGGTCAACGCTGGCAAAAGAAACTCTGAATGGGATTCTGCAAGGATTCAGGGTTATCTACTGGGCCAATCTCTTGGATGGAG
Seq A exon
AGCTAGGAGAAATAAGGAATGTCACTACTACACAGCCATCTCTAGAGCTTGATGGTCTGGAAAAATACACCAACTACAGCATTCAGGTGCTGGCTTTCACACGAGCTGGAGATGGAGTGAGAAGTGAACAGATTTTCACCCGCACTAAAGAAGATG
Seq C2 exon
TTCCAGGCCCTCCTGCTGGCGTTAAAGCAGCTGCATCTTCAGCCTCCACCGTCTTTGTGTCCTGGCTCCCTCCCCTCAAGCTCAACGGCATCATTCGGAAATACACCGTGTTCTGCTCACACCCCTACCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'29-25,'29-24,30-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.189 C2=0.122
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(52.3=92.0)
A:
PF0004116=fn3=PD(46.6=77.4)
C2:
PF0004116=fn3=PU(50.0=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCACATCACCAGAAACC
R:
GTAGGGGTGTGAGCAGAACAC
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]