DreEX6076190 @ danRer10
Exon Skipping
Gene
ENSDARG00000013892 | sorl1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:ZFIN;Acc:ZDB-GENE-050208-22]
Coordinates
chr15:21629250-21632453:-
Coord C1 exon
chr15:21632328-21632453
Coord A exon
chr15:21629470-21629580
Coord C2 exon
chr15:21629250-21629381
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTCTGGTGTCGTTCTGCAGGAA
3' ss Score
10.19
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TGGGTCACCATACGTGTGAGAGCAGTAGTTTCCAGTGTCACACTGGTCACTGTATTCCTCAGCGCTGGGTCTGTGACGGAGATGACGACTGCCAGGATGGCTCAGACGAGGACCCTACGCAGTGTG
Seq A exon
GAAGGCAAAAGTGCAATGGCTTCTTATGCTCGAATGGCACCTGTCTGCCTGCAAGTGCTCACTGCAATGGTGTTGAGGACTGTCCAGGTGGCGCTGATGAGCAAAACTGTG
Seq C2 exon
GTCCACTCTGTGCACACTATATGGAGTTTGTGTGCAGAAATCGAGCGCAGTGTCTGTTTCAGTCTCTGGTTTGTGACGGGACCCGGCACTGTGCTGATGGTTCTGATGAGGACCCCATTTATGCTGGATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013892-'29-34,'29-33,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(88.6=90.7),PF0005713=Ldl_recept_a=PU(7.5=7.0)
A:
PF0005713=Ldl_recept_a=PD(9.1=10.5),PF0005713=Ldl_recept_a=PD(90.0=94.7)
C2:
PF0005713=Ldl_recept_a=WD(100=95.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCACCATACGTGTGAGA
R:
TGGGGTCCTCATCAGAACCAT
Band lengths:
243-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]