RnoEX0000925 @ rn6
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr8:46275318-46280169:-
Coord C1 exon
chr8:46280044-46280169
Coord A exon
chr8:46277364-46277471
Coord C2 exon
chr8:46275318-46275364
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTGATTGACTTAAATTTCAGAGA
3' ss Score
5.83
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CCATCTACCACACCTGTGAGGCCTCCAACTTCCAATGCCACAATGGCCACTGCATCCCCCAGCGATGGGCATGTGACGGTGACGCGGATTGCCAGGACGGCTCTGATGAAGATCCCATCAGCTGTG
Seq A exon
AGAAAAAGTGCAATGGATTCCACTGCCCAAACGGCACGTGCATCCCATCCAGCAAGCATTGTGACGGGCTGCGGGACTGCCCCGACGGCTCTGACGAGCAGCACTGTG
Seq C2 exon
AGCCCTTCTGCACACGTTTCATGGACTTTGTGTGTAAGAACCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
Rn.234289_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTGAGGCCTCCAACTT
R:
TGACGGTTCTTACACACAAAGTCC
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]