MmuEX6065154 @ mm10
Exon Skipping
Gene
ENSMUSG00000049313 | Sorl1
Description
sortilin-related receptor, LDLR class A repeats-containing [Source:MGI Symbol;Acc:MGI:1202296]
Coordinates
chr9:42003986-42008304:-
Coord C1 exon
chr9:42008179-42008304
Coord A exon
chr9:42005806-42005913
Coord C2 exon
chr9:42003986-42004117
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTAATTGACTTAAATTTCAGAGA
3' ss Score
5.17
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CCATCTATCATACCTGTGAGGCCTCCAACTTCCAGTGCCACAATGGCCACTGCATCCCCCAGCGATGGGCATGTGACGGTGATGCGGATTGCCAGGATGGCTCTGACGAAGATCCCGTCAGCTGTG
Seq A exon
AGAAAAAGTGCAATGGATTCCACTGCCCAAACGGCACGTGCATCCCGTCCAGCAAGCATTGTGATGGGCTGAGGGACTGCCCCGACGGCTCCGATGAGCAGCACTGTG
Seq C2 exon
AGCCCTTCTGCACGCGCTTCATGGACTTCGTGTGTAAGAACCGTCAGCAGTGTCTGTTCCACTCCATGGTGTGTGACGGGATCGTCCAGTGCCGAGATGGCTCTGATGAGGATGCGGCCTTCGCTGGATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049313-'58-45,'58-44,59-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(90.7=90.7),PF0005713=Ldl_recept_a=PU(7.7=7.0)
A:
PF0005713=Ldl_recept_a=PD(7.0=8.1),PF0005713=Ldl_recept_a=PD(89.7=94.6)
C2:
PF0005713=Ldl_recept_a=WD(100=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATACCTGTGAGGCCTCCA
R:
GAAGGCCGCATCCTCATCAG
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types