DreEX6076571 @ danRer10
Exon Skipping
Gene
ENSDARG00000075509 | phf12b
Description
PHD finger protein 12b [Source:ZFIN;Acc:ZDB-GENE-110628-2]
Coordinates
chr15:24623605-24626047:+
Coord C1 exon
chr15:24623605-24623703
Coord A exon
chr15:24625714-24625796
Coord C2 exon
chr15:24625909-24626047
Length
83 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTATGTGTTATCCAGGTG
3' ss Score
8.09
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
CACAAAAAAGGGACGTACAAGCTCGAGCAGTACTATGTCCTTTAACAGGAAAGGGGGCAGCTATCAACATGTGCTATAGAACTCTGTACATAGGAACAG
Seq A exon
GTGCTGAAATGGATGTGTGCCTTACAAACTACGGTCATTGCAATTATGTTTCTGGGAAACATGCCTGCATCTTTTATGATGAA
Seq C2 exon
AACACGAAGCATTATGAGCTTCTGAACTACAGTGAACATGGGACAACTGTAGACAATGTGCTTTACTCGTGTGACTTCTCCGACAAACCAAACATCACATCACCTAGTGCACTCGCATCGAAAGTACAAAACAGCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075509-'14-22,'14-21,15-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0049821=FHA=PU(7.9=14.7)
A:
PF0049821=FHA=FE(42.9=100)
C2:
PF0049821=FHA=PD(46.0=61.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGGGGGCAGCTATCAAC
R:
GCGAGTGCACTAGGTGATGTG
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]