RnoEX0065294 @ rn6
Exon Skipping
Gene
ENSRNOG00000009566 | Phf12
Description
PHD finger protein 12 [Source:RGD Symbol;Acc:1305731]
Coordinates
chr10:64815462-64818664:-
Coord C1 exon
chr10:64818566-64818664
Coord A exon
chr10:64817608-64817690
Coord C2 exon
chr10:64815462-64817160
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGACTCCTGCCACCTTGCAGGAG
3' ss Score
8.6
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
TGCAAAGGAAGGAGGTACAAGCCCGAGCTGTGTTCTACCCCCTCTTAGGGTTGGGAGGAGCTGTGAACATGTGCTATCGAACCCTCTACATCGGGACAG
Seq A exon
GAGCTGACATGGATGTGTGCCTTACAAACTATGGTCACTGTAACTACGTGTCCGGGAAACATGCCTGCATATTCTACGATGAG
Seq C2 exon
AATACCAAACATTATGAGCTGTTAAACTACAGTGAGCACGGGACAACGGTGGACAATGTGCTGTATTCATGTGACTTCTCTGAGAAGACCCCGCCAACCCCCCCAAGCAGTATTGTTGCCAAAGTACAGAGTGTCATCAGTAAGTTGGAGCAGAGGCCTGTGGCCACACAGCTAAGGCCCCAGTCACCTTGATTCTACCATGCTGTCAGTGACCTACAGTTCCTTCCTTCCCAGCCCCATTGGCCAAGCTCACTGTTGGTGGGCCTGGGAAAGCCACCAAGAATCAAGTGCTGAACACCCACATATGTGTCAGACCCTTCTGGGGACTTGAGACTCCAGCCCCATCTGAGCATCCCTCAGCCCTGATCATGTAGCATAGAATGGGGAGATGCAGGGGGCCAGTACTGCCAGTCATCCCAGACAGGTCAGCCGTTCACTGTTCCCCTCCTATGATCATGCCCCTTTTTCCCAGGGCGCCGCCGACACCAGAAACAGGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009566-'25-23,'25-22,26-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.170
Domain overlap (PFAM):
C1:
PF0049821=FHA=PU(7.7=14.7)
A:
PF0049821=FHA=FE(41.5=100)
C2:
PF0049821=FHA=PD(47.7=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAACCCTCTACATCGGGAC
R:
AGGCCTCTGCTCCAACTTACT
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]