GgaEX0005365 @ galGal3
Exon Skipping
Gene
ENSGALG00000004029 | PHF12
Description
NA
Coordinates
chr19:5847649-5848977:-
Coord C1 exon
chr19:5848879-5848977
Coord A exon
chr19:5848292-5848374
Coord C2 exon
chr19:5847649-5847787
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTGTCCTCCCCGTTGGCAGGAG
3' ss Score
7.73
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CGCAAAGAAAGGAAGTGCAAGCCCGGGCAGTGTTCTACCCTCTGATGGGCTTGGGGGGTGCAGTCAATATGTGCTATCGAACCCTCTACATTGGGACAG
Seq A exon
GAGCCGATATGGATGTGTGCCTTACAAGCTATGGTCACTGTAACTACGTGTCCGGCAAACACGCCTGCATATTCTACGATGAG
Seq C2 exon
AACACGAAACATTACGAGCTGTTGAACTACAGCGAGCACGGGACGACGGTGGACAACGTTCTCTACTCGTGTGACTTCTCAGAGAAGATGGCTCCCACTCCTCCCAGCAGTATTGTTGCCAAAGTGCAGAGTGTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004029_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF0049821=FHA=PU(7.7=14.7)
A:
PF0049821=FHA=FE(41.5=100)
C2:
PF0049821=FHA=PD(47.7=66.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGTGTTCTACCCTCTGA
R:
GGAGTGGGAGCCATCTTCTCT
Band lengths:
176-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]