DreEX6077656 @ danRer10
Exon Skipping
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35482927-35486665:+
Coord C1 exon
chr15:35482927-35483052
Coord A exon
chr15:35483134-35483262
Coord C2 exon
chr15:35486601-35486665
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTGTAATATTGTGCGTTTAGTTT
3' ss Score
4.59
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GTTGCGAGTCTGGCCGTTTTGGACGTGATTGTGCAGGTGTGTGTGATTGTGATGGGGCATCCTGTGATCCAACCACTGGACAGTGTCTCTGTCCTCCTGGAAAGACTGGAGAACGCTGTGAGAAAG
Seq A exon
TTTGTGACAGCAGGTATTATGGCCCGGACTGCTCTTTCCAGTGTGAGTGTGTTCATGGAGGACAATGTGACCCTCAAACTGGACACTGCTCCTGTCCTCAAACCTGGCTAGGGCCTACCTGTGAACATG
Seq C2 exon
GTGCTTTTGCAGATCTTGCGTTTGCTCAAATACACAAGAGGCGACGGCATGTATCACACTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216-'53-53,'53-52,54-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(31.8=32.6),PF0005319=Laminin_EGF=PU(62.2=65.1)
A:
PF0005319=Laminin_EGF=PD(35.6=36.4),PF079748=EGF_2=WD(100=63.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGAGTCTGGCCGTTTTG
R:
GGAGTGTGATACATGCCGTCG
Band lengths:
187-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]