GgaEX6046680 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:21867811-21871855:-
Coord C1 exon
chr9:21871730-21871855
Coord A exon
chr9:21868828-21868956
Coord C2 exon
chr9:21867811-21868306
Length
129 bp
Sequences
Splice sites
3' ss Seq
AAATACTTCTGTCCTTCCAGGCT
3' ss Score
7.65
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCTGTGCCAGTGGGCGCTTCGGTGAGCGGTGCCAGCGCCAGTGCGACTGTGGAGGAGCTCCCTGCGACCCGGCCACTGGGAAATGCCTCTGCCCACCTGGAAAGACTGGGGACAAGTGTGACATTG
Seq A exon
GCTGCCGGTCTGACCAGTACGGCCCCGACTGCTCTCTGCGATGCCAGTGTGCCAGCAAGTCCCAGTGCAACCCATACAATGGGAAATGTGTCTGTCCAGCCACGTGGATGGGGCCAACCTGCAAGGAAG
Seq C2 exon
GTGGCCCTCCAAAGCTTCCTTTTTATGAAGAACAAACTCAAGAAAGAGGGAATATTTTTCCGAGAGCTCTACAACAGTAACATTTGGACTAATAAATGAACTCTTTTATATGCACAGACGGTATTTGAATTTGGATATGAAAACAGGTATTCAATTCAGCTTGAATTGTACTGAAGTATTCACACTTCTCATGGAAGACTACAGAGGCCATTTAGTAGCTGGTTCCTTTTAAAAAGTTGAATCTGTTTCATGTATTTATTCCTAGCCTGTTGCCTCTCCATTAGTCTACTTGGGACATTCTTTCTGATATGTAGTATAATTTGTTGCTTGAAAGCTTGGACACGTGGGTTTTTCGTTTTCTTTTTGCTTTTTGTAAAGCCAGCTCCAAAAAGGATCAGTAACATACCAATTTAGAGTGAGCCAGGCCATTTTAAATGACCATTTAACAGATTATGAAGCCAATGCAGGTTCACTGCAAAATCATGTTGCTCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'34-41,'34-40,35-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAAAGACTGGGGACAA
R:
TGGCCTCTGTAGTCTTCCATGA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]