GgaEX6046680 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19789467-19793095:-
Coord C1 exon
chr9:19792970-19793095
Coord A exon
chr9:19790068-19790196
Coord C2 exon
chr9:19789467-19789546
Length
129 bp
Sequences
Splice sites
3' ss Seq
AAATACTTCTGTCCTTCCAGGCT
3' ss Score
7.65
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCTGTGCCAGTGGGCGCTTCGGTGAGCGGTGCCAGCGCCAGTGCGACTGTGGAGGAGCTCCCTGCGACCCGGCCACTGGGAAATGCCTCTGCCCACCTGGAAAGACTGGGGACAAGTGTGACATTG
Seq A exon
GCTGCCGGTCTGACCAGTACGGCCCCGACTGCTCTCTGCGATGCCAGTGTGCCAGCAAGTCCCAGTGCAACCCATACAATGGGAAATGTGTCTGTCCAGCCACGTGGATGGGGCCAACCTGCAAGGAAG
Seq C2 exon
GTGGCCCTCCAAAGCTTCCTTTTTATGAAGAACAAACTCAAGAAAGAGGGAATATTTTTCCGAGAGCTCTACAACAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'45-44,'45-43,46-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGCGCTTCGGTGAG
R:
ACTGTTGTAGAGCTCTCGGAA
Band lengths:
196-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]