DreEX6078631 @ danRer10
Exon Skipping
Gene
ENSDARG00000036864 | slc34a2b
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030709-1]
Coordinates
chr23:1071369-1072233:+
Coord C1 exon
chr23:1071369-1071512
Coord A exon
chr23:1071812-1071923
Coord C2 exon
chr23:1072038-1072233
Length
112 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTTGTTTGTTTCAGTGC
3' ss Score
10.55
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGAAGGCAGCGGGGGACATCTTTAAAGATAATGCGGTGCTGTCCAACCCTGTGGCCGGGCTGGTGATCGGGGTGCTGGTCACGGTTCTAGTCCAGAGCTCCAGCACCTCCTCCTCCATCGTGGTCAGCATGGTATCGTCTGGAT
Seq A exon
TGCTGGAGGTGAAGTCAGCAGTGCCTATCATCATGGGTGCAAATATCGGCACTTCAGTAACAAACACTATTGTGGCTGTGATGCAAGCTGGAGACCGCAATGAGTTTCGCAG
Seq C2 exon
GGCTTTTGCGGGGGCGACGGTGCATGACTTCTTCAACTGGCTGTCGGTGCTGGTGCTCCTGCCTCTGGAAGTGGCCTCAGGGATGCTCTACAGACTCACCAAACTTGTGATCGATTCCTTCAACATCCAGACGGGCGCAGACGCTCCAGACCTGCTGAAAGTCATCACAGAGCCGCTCACCAAGAACATCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036864-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(34.3=100)
A:
PF0269010=Na_Pi_cotrans=FE(26.4=100)
C2:
PF0269010=Na_Pi_cotrans=PD(26.4=56.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGTCCAGAGCTCCAGCAC
R:
ATGATGTTCTTGGTGAGCGGC
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]