RnoEX0082282 @ rn6
Exon Skipping
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60263236-60266455:-
Coord C1 exon
chr14:60266312-60266455
Coord A exon
chr14:60265716-60265827
Coord C2 exon
chr14:60263236-60263431
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTCTCACTCTTCAGTGC
3' ss Score
10.11
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GAAAAATGGCCGGCCAGTTCTTCAGCAACAACTCCATTATGTCTAATCCTGTGGCTGGACTTGTGATAGGGGTGCTGGTGACAGTCATGGTGCAAAGCTCCAGCACGTCCTCGTCAATCATCGTCAGCATGGTTGCCTCCTCCT
Seq A exon
TGCTGTCAGTCCGCGCTGCCATCCCCATCATCATGGGTGCTAACATCGGGACCTCCATCACCAACACGATTGTGGCACTTATGCAGGCAGGAGACAGAAATGAGTTCAGAAG
Seq C2 exon
GGCATTTGCAGGAGCTACTGTCCATGACTTCTTCAACTGGCTCTCTGTGTTGGTGCTCTTACCTCTGGAGGCTGCCACCCATTACCTGGAGAAACTGACCAACCTTGTGTTGGAAACCTTCAGCTTCCAGAATGGAGAAGATGCCCCAGACATTCTGAAAGTCATAACAGACCCCTTCACAAAGCTCATCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(33.3=100)
A:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
C2:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTTGTGATAGGGGTGCT
R:
ATGTCTGGGGCATCTTCTCCA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]