HsaEX6083856 @ hg19
Exon Skipping
Gene
ENSG00000157765 | SLC34A2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:HGNC Symbol;Acc:11020]
Coordinates
chr4:25667750-25671464:+
Coord C1 exon
chr4:25667750-25667893
Coord A exon
chr4:25669502-25669613
Coord C2 exon
chr4:25671269-25671464
Length
112 bp
Sequences
Splice sites
3' ss Seq
GGTACTTTTCCATCCTCTAGTGC
3' ss Score
5.89
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAAAAATGGCAGGACAGTTCTTCAGCAACAGCTCTATTATGTCCAACCCTTTGTTGGGGCTGGTGATCGGGGTGCTGGTGACCGTCTTGGTGCAGAGCTCCAGCACCTCAACGTCCATCGTTGTCAGCATGGTGTCCTCTTCAT
Seq A exon
TGCTCACTGTTCGGGCTGCCATCCCCATTATCATGGGGGCCAACATTGGAACGTCAATCACCAACACTATTGTTGCGCTCATGCAGGTGGGAGATCGGAGTGAGTTCAGAAG
Seq C2 exon
AGCTTTTGCAGGAGCCACTGTCCATGACTTCTTCAACTGGCTGTCCGTGTTGGTGCTCTTGCCCGTGGAGGTGGCCACCCATTACCTCGAGATCATAACCCAGCTTATAGTGGAGAGCTTCCACTTCAAGAATGGAGAAGATGCCCCAGATCTTCTGAAAGTCATCACTAAGCCCTTCACAAAGCTCATTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157765-'9-12,'9-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077877=DUF1625=PD(37.5=77.1),PF0269010=Na_Pi_cotrans=FE(65.4=100)
A:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
C2:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGTTGGGGCTGGTGATC
R:
AGATCTGGGGCATCTTCTCCA
Band lengths:
250-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)