GgaEX0021117 @ galGal3
Exon Skipping
Gene
ENSGALG00000014372 | Q6TQF9_CHICK
Description
NA
Coordinates
chr4:75892018-75894637:-
Coord C1 exon
chr4:75894494-75894637
Coord A exon
chr4:75893765-75893876
Coord C2 exon
chr4:75892018-75892213
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTTCATTTTCTACTTTCTAGTGC
3' ss Score
7.23
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTAAAGCAGCAGGGGACATTTTTAAAGATGATTCAGTGCTCTCTAATCCTGTTGCGGGGCTGGTGATAGGAGTTCTGGTGACTGTGATGGTCCAGAGCTCCAGCACTTCTTCATCCATCATCGTCAGCATGGTGTCCTCTACAC
Seq A exon
TGCTGACTGTACAATCAGCTATTCCTATCATTATGGGGGCAAACATTGGCACCTCAGTTACAAACACAATTGTGGCGCTCATGCAAGCCGGGGACAGGAATGAATTTAGAAG
Seq C2 exon
GGCCTTTGCTGGGGCAACAATCCATGATTTCTTTAACTGGCTTGCTGTGTTTGCATTGTTGCCCATTGAAGTCATTTCTGGCTATCTTTACCATCTCACCAATGTTATAGTTGAGTCCTTTCATCTTGAAAGTGGTGAAGATGCCCCTGAGCTACTAAAAGTCATCACAGACCCTTTTACAAAGCTCATCATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(34.3=100)
A:
PF0269010=Na_Pi_cotrans=FE(26.4=100)
C2:
PF0269010=Na_Pi_cotrans=PD(26.4=56.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTGGTGATAGGAGTTCT
R:
AGTAGCTCAGGGGCATCTTCA
Band lengths:
245-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]