GgaEX0021118 @ galGal3
Exon Skipping
Gene
ENSGALG00000014372 | Q6TQF9_CHICK
Description
NA
Coordinates
chr4:75893765-75895604:-
Coord C1 exon
chr4:75895476-75895604
Coord A exon
chr4:75894494-75894637
Coord C2 exon
chr4:75893765-75893876
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTGAGAGTATGTTTTGGTAGGTA
3' ss Score
1.69
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
AACTGGATAGAAAAGGAAAAATCATTCGTGTACTCTATGGGATTGGAAAGTTCATTATGTTGCTTGGATTACTCTACTTGTTCGTGTGTTCTCTGGATGTACTGAGCTCTGCTTTTCAACTAGTAGGAG
Seq A exon
GTAAAGCAGCAGGGGACATTTTTAAAGATGATTCAGTGCTCTCTAATCCTGTTGCGGGGCTGGTGATAGGAGTTCTGGTGACTGTGATGGTCCAGAGCTCCAGCACTTCTTCATCCATCATCGTCAGCATGGTGTCCTCTACAC
Seq C2 exon
TGCTGACTGTACAATCAGCTATTCCTATCATTATGGGGGCAAACATTGGCACCTCAGTTACAAACACAATTGTGGCGCTCATGCAAGCCGGGGACAGGAATGAATTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372-'6-6,'6-4,7-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(12.1=38.6)
A:
PF0269010=Na_Pi_cotrans=FE(34.3=100)
C2:
PF0269010=Na_Pi_cotrans=FE(26.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATAGAAAAGGAAAAATCATTCG
R:
AAATTCATTCCTGTCCCCGGC
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]