RnoEX6042533 @ rn6
Exon Skipping
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60265716-60267886:-
Coord C1 exon
chr14:60267758-60267886
Coord A exon
chr14:60266312-60266455
Coord C2 exon
chr14:60265716-60265827
Length
144 bp
Sequences
Splice sites
3' ss Seq
GACCACTCTTTGTCTTCTAGGAA
3' ss Score
10.43
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AGAGAGACTCCAAAGGGAAGATTCTCTGCATTTTCCAGGGGATTGGGAAATTCATCCTTCTCCTGGGGTTTCTCTACTTGTTTGTGTGCTCCCTGGATGTACTCAGTAGTGCCTTCCAGCTTGTTGGAG
Seq A exon
GAAAAATGGCCGGCCAGTTCTTCAGCAACAACTCCATTATGTCTAATCCTGTGGCTGGACTTGTGATAGGGGTGCTGGTGACAGTCATGGTGCAAAGCTCCAGCACGTCCTCGTCAATCATCGTCAGCATGGTTGCCTCCTCCT
Seq C2 exon
TGCTGTCAGTCCGCGCTGCCATCCCCATCATCATGGGTGCTAACATCGGGACCTCCATCACCAACACGATTGTGGCACTTATGCAGGCAGGAGACAGAAATGAGTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.8=38.6)
A:
PF0269010=Na_Pi_cotrans=FE(33.3=100)
C2:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGACTCCAAAGGGAAGA
R:
ACTCATTTCTGTCTCCTGCCTG
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]