MmuEX6017692 @ mm9
Exon Skipping
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53450378-53452640:+
Coord C1 exon
chr5:53450378-53450506
Coord A exon
chr5:53451999-53452142
Coord C2 exon
chr5:53452604-53452640
Length
144 bp
Sequences
Splice sites
3' ss Seq
AACCATCGTTTGTCTTCTAGGCA
3' ss Score
9.26
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AGAGAGACACCAAAGGGAAGACGCTCTGCATTTTCCAGGGGGTTGGGAAGTTCATTCTTCTCCTGGGGTTTCTCTACTTGTTCGTGTGCTCCCTGGATGTACTGAGCAGCGCCTTCCAGCTTGTTGGAG
Seq A exon
GCAAAGTGGCCGGACAGTTCTTCAGCAACAACTCCATCATGTCTAATCCTGTGGCTGGACTGGTGATAGGGGTTCTGGTGACAGTCATGGTTCAAAGCTCCAGCACCTCTTCCTCCATCATCGTCAGCATGGTTGCTTCTTCAT
Seq C2 exon
TGCTGACGGTTCGGGCTGCCATCCCCATCATCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.8=38.6)
A:
PF0269010=Na_Pi_cotrans=FE(33.3=100)
C2:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACACCAAAGGGAAGACGC
R:
CCATGATGATGGGGATGGCAG
Band lengths:
162-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: