MmuEX6017692 @ mm10
Exon Skipping
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53059139-53061401:+
Coord C1 exon
chr5:53059139-53059267
Coord A exon
chr5:53060760-53060903
Coord C2 exon
chr5:53061365-53061401
Length
144 bp
Sequences
Splice sites
3' ss Seq
AACCATCGTTTGTCTTCTAGGCA
3' ss Score
9.26
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AGAGAGACACCAAAGGGAAGACGCTCTGCATTTTCCAGGGGGTTGGGAAGTTCATTCTTCTCCTGGGGTTTCTCTACTTGTTCGTGTGCTCCCTGGATGTACTGAGCAGCGCCTTCCAGCTTGTTGGAG
Seq A exon
GCAAAGTGGCCGGACAGTTCTTCAGCAACAACTCCATCATGTCTAATCCTGTGGCTGGACTGGTGATAGGGGTTCTGGTGACAGTCATGGTTCAAAGCTCCAGCACCTCTTCCTCCATCATCGTCAGCATGGTTGCTTCTTCAT
Seq C2 exon
TGCTGACGGTTCGGGCTGCCATCCCCATCATCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188-'9-10,'9-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.8=38.6)
A:
PF0269010=Na_Pi_cotrans=FE(33.3=100)
C2:
PF0269010=Na_Pi_cotrans=PD(14.3=84.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACACCAAAGGGAAGACGC
R:
CCATGATGATGGGGATGGCAG
Band lengths:
162-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types