DreEX6079454 @ danRer10
Exon Skipping
Gene
ENSDARG00000001881 | cacnb3a
Description
calcium channel, voltage-dependent, beta 3a [Source:ZFIN;Acc:ZDB-GENE-060221-2]
Coordinates
chr23:14402700-14403454:+
Coord C1 exon
chr23:14402700-14402800
Coord A exon
chr23:14403101-14403252
Coord C2 exon
chr23:14403359-14403454
Length
152 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGTTTGTGCCCTCAGCGG
3' ss Score
9.33
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATTTCAATAACCCGAGTAACTGCTGACCTTTCACTGGCCAAGAGATCAGTTCTCAACAAGAGACCCATCATGGAGAGGTCAAACACACGGACCAGTTTGG
Seq A exon
CGGAAGTACAGAGTGAGATTGAGAGAATATTTGAGTTGGCCAAAACCCTTCAGCTGGTGATTCTGGATGCAGACACCATTAACCATCCAGCACAGCTAGCTAAAACCTCACTAGCACCTATTATTGTATATGTAAAGGTCACGTCTCCAAAG
Seq C2 exon
GTCCTACAGCGGTTGATAAAATCCAGGGGTAAATCACAGAGCAAACACCTCAATGTTCAGATGATGGCAGCAGATAAATTGACTCAGTGTCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001881-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(19.1=100)
A:
PF0062516=Guanylate_kin=FE(28.1=100)
C2:
PF0062516=Guanylate_kin=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAACCCGAGTAACTGCTGAC
R:
CACTGAGTCAATTTATCTGCTGCC
Band lengths:
186-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]