DreEX6079844 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19592384-19595358:-
Coord C1 exon
chr23:19595144-19595358
Coord A exon
chr23:19594784-19594976
Coord C2 exon
chr23:19592384-19592576
Length
193 bp
Sequences
Splice sites
3' ss Seq
ACTCTTGTTTTTAATTGTAGGTG
3' ss Score
9.74
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCCATTGATGATAGATCCACAGGGCCAGGCCAACAAATGGGTAAAAAATTCAGAACGGGACCATAATCTGAATGTGATCAAGCTAACTGATGCTGACTACATGAGAACACTTGAGAACTGCATCCAGTTTGGTACTCCACTGCTGCTGGAGAACGTTGGAGAGGAACTTGACCCCTCATTAGAGCCACTTTTGCTCAAACAAGTTTTCAAACAAG
Seq A exon
GTGGTGTGGACTGTATCCGATTGGGTGAAAGTGTGATTGAGTACTCTGCTGACTTTCGCTTTTACATCACTACAAAGCTGAGGAACCCTCATTATCTTCCTGAGTTAGCAACCAAAGTGTGCCTGTTGAACTTCATGATTACACCAGAGGGTCTTGAAGACCAGCTGCTTGGCATTGTGGTAGCAAAAGAGAG
Seq C2 exon
GCCCGAATTAGAGGAGGAGAGAAATGCCCTGATCCTGCAGTCTGCAGCCAATAAGAAGCAGCTTAAGGAGATTGAGGACCAAATCCTGGAGACTCTGCAGTCCTCAGAGGGGAACATCCTGGAAGATGAGAGTGCCATCCAGATCCTGGACGCTGCAAAGCTCATGTCTAATGAGATTACCAAGAAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'60-60,'60-59,61-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(31.2=100)
A:
PF127812=AAA_9=FE(27.7=100)
C2:
PF127812=AAA_9=PD(26.0=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATAGATCCACAGGGCCAGG
R:
ACTGCAGGATCAGGGCATTTC
Band lengths:
248-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]