GgaEX0007803 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQR9]
Coordinates
chr12:8652114-8654126:-
Coord C1 exon
chr12:8653912-8654126
Coord A exon
chr12:8653164-8653356
Coord C2 exon
chr12:8652114-8652306
Length
193 bp
Sequences
Splice sites
3' ss Seq
GTTTCCAATCTTAACTTTAGGAG
3' ss Score
7.32
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GCCATTAATGATTGATCCTCAAGGTCAAGCAAATAAATGGATCAAGAATTTTGAGAAAGAAAACCACCTGAATGTTATCAAGATCAGTGACACAGATTATATGAGAACCCTGGAGAACTGCATTCAGTTTGGAAATCCCCTTCTGCTGGAAAATGTTGGAGAAGAACTAGACCCATCACTTGAACCTCTTCTGCTTAAGCAGACTTTTAAACAAG
Seq A exon
GAGGCATGGATTGTATCAGGCTTGGTGAGGCGGTTATTGAGTATTCCAGTGATTTCAAGTTTTTTATTACCACAAAACTGAGAAATCCACATTATATGCCTGAACTCGCTACAAAAGTTTCTTTACTCAATTTTATGATAACACCAGAGGGACTTGAAGACCAATTGCTAGGTATTGTTGTAGCAAAAGAGAG
Seq C2 exon
ACCAGAATTGGAAGATGAAAGAAATGCTCTCATCCTTCAGTCTGCAGCCAATAAAAAAAATCTAAAAGAAATTGAGAAGAAAATTCTAGAAACCCTACAGTCATCTGAAGGGAATATTCTGGAAGATGAGACAGCAATCACAATCTTGGATTCTGCTAAAATAATGGCTAATGAAATCACAAAAAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(31.2=100)
A:
PF127812=AAA_9=FE(27.7=100)
C2:
PF127812=AAA_9=PD(26.0=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAACCCTGGAGAACTGCA
R:
TGTGATTGCTGTCTCATCTTCCA
Band lengths:
256-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]