RnoEX0028463 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2498216-2501236:+
Coord C1 exon
chr16:2498216-2498430
Coord A exon
chr16:2499306-2499498
Coord C2 exon
chr16:2501044-2501236
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTCTGGAATATAGGTG
3' ss Score
6.13
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GCCTTTAATGATCGACCCCCAGGGTCAAGCAAATAAGTGGATCAAAAACTCTGAGAAAGATAATCAGCTCAGTGTTATTAAGTTATCAGACTCAGACTATATGAGAACCTTGGAAAACTGCATTCAGTTGGGAACTCCAGTTCTCCTGGAAAATGTTGGTGAAGATTTGGATCCCTCCTTGGAGCCTTTGTTACTCAGACAAACTTTTAAACAAG
Seq A exon
GTGGTATTGACTGCATCAGACTTGGTGAAGTCATTATTGAATATTCTTTTGATTTTAAATTTTATATCACCACAAAACTGAGAAATCCACACTACATGCCAGAACTGGCTACAAAAGTGTCTTTGCTCAATTTCATGATAACTCCGGAAGGGCTGGAAGATCAGCTACTAGGCATTGTTGTTGCCAAGGAGAG
Seq C2 exon
ACCAGAGTTAGAGGAGGAGCGAAATGCTCTCATTCTTCAGTCCGCAGCTAACAAGAAGCAGCTCAAAGACATCGAGACAAGGATTTTAGAAACACTGTCATGTTCTGAAGGGAACATTCTGGAAGATGAAAGTGCGATAAAAGTCTTAGACTCTGCCAAAATGATGTCTAATGAGATCACGAAGAAACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865-'62-68,'62-67,63-68
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(31.2=100)
A:
PF127812=AAA_9=FE(27.7=100)
C2:
PF127812=AAA_9=PD(26.0=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAGGGTCAAGCAAATAA
R:
AGCTGCGGACTGAAGAATGAG
Band lengths:
249-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]