DreEX6079845 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19592134-19594976:-
Coord C1 exon
chr23:19594784-19594976
Coord A exon
chr23:19592384-19592576
Coord C2 exon
chr23:19592134-19592306
Length
193 bp
Sequences
Splice sites
3' ss Seq
AATTTCTCTTCTGTTTTCAGGCC
3' ss Score
10.55
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
Exon sequences
Seq C1 exon
GTGGTGTGGACTGTATCCGATTGGGTGAAAGTGTGATTGAGTACTCTGCTGACTTTCGCTTTTACATCACTACAAAGCTGAGGAACCCTCATTATCTTCCTGAGTTAGCAACCAAAGTGTGCCTGTTGAACTTCATGATTACACCAGAGGGTCTTGAAGACCAGCTGCTTGGCATTGTGGTAGCAAAAGAGAG
Seq A exon
GCCCGAATTAGAGGAGGAGAGAAATGCCCTGATCCTGCAGTCTGCAGCCAATAAGAAGCAGCTTAAGGAGATTGAGGACCAAATCCTGGAGACTCTGCAGTCCTCAGAGGGGAACATCCTGGAAGATGAGAGTGCCATCCAGATCCTGGACGCTGCAAAGCTCATGTCTAATGAGATTACCAAGAAACAGCAG
Seq C2 exon
ATCGCAGAGAAGACTGAGATTGAAATAGCCGAGTCGAGGGAGGGCTACAGAGCCATCGCCAAACACTCCTCCATCCTCTTCTTTACTATCGCAGACCTGGCCAACATCGACCCCATGTATCAATACTCTCTCAACTGGTTTGTCAACCTCTACGTCAACTCCATTCTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'61-61,'61-60,62-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(27.7=100)
A:
PF127812=AAA_9=PD(26.0=92.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGATTGGGTGAAAGTGTGA
R:
GTGTTTGGCGATGGCTCTGTA
Band lengths:
244-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]