DreEX6080172 @ danRer10
Exon Skipping
Gene
ENSDARG00000079199 | megf6a
Description
multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
Coordinates
chr23:21217815-21219579:-
Coord C1 exon
chr23:21219451-21219579
Coord A exon
chr23:21218022-21218153
Coord C2 exon
chr23:21217815-21217943
Length
132 bp
Sequences
Splice sites
3' ss Seq
GCATGTGTTTTCTGTGGCAGCTT
3' ss Score
7.9
5' ss Seq
AAAGTATGA
5' ss Score
3.87
Exon sequences
Seq C1 exon
TCTGTCCAGATGGGCACTTTGGCCTGAGCTGCCTGTTGCGCTGCTCCTGTCAAAACGAAGGGAAATGCCACCATGTGACTGGCCTCTGTGTTTGTAAAGATGGCTGGATGGGACCCAACTGCGCAAAAG
Seq A exon
CTTGTGTGGCTGGACGATGGGGGCCGAACTGTGCCAACCAGTGTGACTGCAGGAGCAGCGTGGGCAGCTGTGACCCTGTGATTGGCCTGTGTCATTGTGAAGCGGGCTACATGGGACCACGCTGTGATCAAA
Seq C2 exon
AGTGTCCTCAGGGTTTCTTCGGCCAGAGCTGCCAGCACAGATGCCAGTGTGAGAATGGCGCAGTGTGTGAGCATGTGAGCGGTGCCTGCACTTGTTTGGCTGGCTGGACTGGGACGTATTGTGAAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079199-'21-18,'21-17,23-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=61.4)
A:
PF0005319=Laminin_EGF=PU(64.6=68.9)
C2:
PF0005319=Laminin_EGF=PD(33.3=36.4),PF126612=hEGF=WD(100=29.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCAGATGGGCACTTTGG
R:
CACAATACGTCCCAGTCCAGC
Band lengths:
251-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]