MmuEX6098380 @ mm10
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:154263393-154265198:+
Coord C1 exon
chr4:154263393-154263521
Coord A exon
chr4:154263646-154263777
Coord C2 exon
chr4:154265070-154265198
Length
132 bp
Sequences
Splice sites
3' ss Seq
GACATGTGGCTCTGTTGCAGCCT
3' ss Score
6.67
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
CTTGCCCAGCAGGCTGGTTTGGGACCGGCTGCCAGATGAGGTGTGCTTGTGCCAATGATGGGCATTGCCATCCGGCCACTGGACGCTGTAGCTGTGCCCCTGGGTGGACTGGCCTCAGCTGCCAGAGAG
Seq A exon
CCTGTGACAGTGGACACTGGGGGCCTGACTGCATCCACCCCTGCAACTGCAGTGCAGGCCATGGGAACTGTGACGCCGTCAGTGGCCTCTGCCTGTGTGAGGCTGGCTACGAAGGTCCGCAGTGTGAGCAGT
Seq C2 exon
GGTGTCGCCAAGGCTACTTTGGGCCCGGCTGCGAGCAGAAGTGCAGGTGTGAGCATGGGGCCACCTGTGACCATGTCAGTGGGGCCTGTACCTGCCCAGCTGGCTGGAGGGGAAGCTTCTGCGAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'24-37,'24-26,35-37=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(28.9=29.5),PF0005319=Laminin_EGF=PU(69.0=65.9)
A:
PF0005319=Laminin_EGF=PD(28.6=26.7),PF0005319=Laminin_EGF=PU(63.8=66.7)
C2:
PF0005319=Laminin_EGF=PD(34.0=36.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGCTGGTTTGGGAC
R:
AGAAGCTTCCCCTCCAGCC
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types