DreEX6080799 @ danRer10
Exon Skipping
Gene
ENSDARG00000029146 | lrp1ab
Description
low density lipoprotein receptor-related protein 1Ab [Source:ZFIN;Acc:ZDB-GENE-030131-7126]
Coordinates
chr23:25607013-25611311:-
Coord C1 exon
chr23:25611066-25611311
Coord A exon
chr23:25609874-25610071
Coord C2 exon
chr23:25607013-25607217
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTCCTTGTTTTTTAGATC
3' ss Score
11.61
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ATCTTTGCACGGTGGAAAATGGAGGCTGCAGCCATAACTGTACCATCGCTCCCGGTGAGGGCGTCCTGTGCTCCTGCCCAGCTGGCATGGAGCTGGGTACTGACAACAAGACCTGCCAGATCCAGAGCTTCTGCGCCAAGCATCTGAAGTGCAGCCAGCGCTGTGTGCAGGAGAAGGCCACAGTCAAGTGTGCTTGTTATGAGGGCTGGGCACTCGGGCCTGATGGAGAGAGCTGCAAGAGCACGG
Seq A exon
ATCCATTCAAGCCCTTCATCATCTTCTCCAACCGACATGAGATCCGTCGGATTGACTTGTACAAGGGTGAGTTCAGTGTGCTGGTGCCAGGACTGCGCAACACCATTGCCCTGGACTTCCACTTCAACCAGAGCTCCCTCTACTGGACCGATGTGGTAGAAGACAAGATCTATCGGGGAAAGCTGTCAGAAAACGGAG
Seq C2 exon
CTCTGACCAGTTTTGAGGTGGTGATCCAGTATGGTTTGGCCACCCCAGAGGGATTGGCAGTGGACTGGATTGCGGGAAACATCTACTGGGTGGAAAGTAACCTGGATCAGATCGAGGTGGCCAAGCTGGATGGTACCATGCGCACAACCTTACTAGCTGGAGAGGTGGAGCATCCACGTGCCATTGCACTCGACCCAAGAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029146-'23-31,'23-30,24-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=44.6),PF146701=FXa_inhibition=WD(100=39.8)
A:
PF0005812=Ldl_recept_b=PU(48.9=32.8)
C2:
PF0005812=Ldl_recept_b=PD(48.9=31.9),PF0005812=Ldl_recept_b=WD(100=59.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCTGGGTACTGACAACA
R:
CACCCAGTAGATGTTTCCCGC
Band lengths:
251-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]