RnoEX0050649 @ rn6
Exon Skipping
Gene
ENSRNOG00000025053 | Lrp1
Description
LDL receptor related protein 1 [Source:RGD Symbol;Acc:1307535]
Coordinates
chr7:70881801-70883560:-
Coord C1 exon
chr7:70883315-70883560
Coord A exon
chr7:70882938-70883135
Coord C2 exon
chr7:70881801-70882005
Length
198 bp
Sequences
Splice sites
3' ss Seq
GATCACATGCCTCCCCCCAGATC
3' ss Score
8.48
5' ss Seq
GAGGTGACT
5' ss Score
5.88
Exon sequences
Seq C1 exon
ACCAGTGTTCTCTGAATAATGGTGGCTGTAGTCACAACTGCTCGGTGGCCCCTGGTGAAGGCATTGTGTGCTCTTGCCCTCTGGGCATGGAGCTGGGACCTGACAACCACACCTGCCAGATCCAGAGCTACTGTGCCAAGCACCTCAAATGCAGCCAGAAGTGCGACCAGAACAAGTTCAGTGTGAAGTGCTCCTGCTATGAGGGCTGGGTCTTGGAACCAGACGGGGAGAGCTGCCGCAGCCTGG
Seq A exon
ATCCCTTCAAACCGTTCATCATCTTCTCCAACCGCCATGAGATCAGACGCATTGACCTTCACAAGGGGGACTACAGCGTCCTAGTGCCCGGCCTGCGCAACACCATTGCCCTGGACTTTCACCTCAGCCAGAGTGCCCTCTACTGGACCGATGTGGTAGAGGACAAGATCTACCGTGGGAAGCTGCTGGACAACGGAG
Seq C2 exon
CACTGACCAGCTTTGAGGTGGTGATTCAGTATGGCTTGGCCACCCCAGAGGGCCTGGCTGTAGACTGGATAGCAGGCAACATCTACTGGGTGGAAAGCAACCTGGACCAGATCGAGGTGGCCAAGCTGGATGGAACCCTCCGAACCACTCTGCTGGCGGGCGACATTGAGCACCCAAGGGCAATTGCTCTGGACCCTCGGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025053-'37-37,'37-36,39-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(4.7=2.4),PF146701=FXa_inhibition=WD(100=44.6),PF146701=FXa_inhibition=WD(100=41.0)
A:
NO
C2:
PF0005812=Ldl_recept_b=WD(100=59.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGTGCTCTTGCCCTCTG
R:
TATCCAGTCTACAGCCAGGCC
Band lengths:
255-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]