MmuEX6051952 @ mm10
Exon Skipping
Gene
ENSMUSG00000040249 | Lrp1
Description
low density lipoprotein receptor-related protein 1 [Source:MGI Symbol;Acc:MGI:96828]
Coordinates
chr10:127575284-127577055:-
Coord C1 exon
chr10:127576810-127577055
Coord A exon
chr10:127576440-127576637
Coord C2 exon
chr10:127575284-127575488
Length
198 bp
Sequences
Splice sites
3' ss Seq
GAACACTTGCCTCCCTCCAGATC
3' ss Score
8.87
5' ss Seq
GAGGTGACT
5' ss Score
5.88
Exon sequences
Seq C1 exon
ACCAGTGTTCTCTGAATAATGGTGGCTGTAGTCACAACTGCTCAGTGGCCCCTGGTGAAGGCATCGTGTGCTCTTGCCCTCTGGGCATGGAGCTGGGCTCTGACAACCACACCTGCCAGATCCAGAGCTACTGTGCCAAGCACCTCAAATGCAGCCAGAAGTGTGACCAGAACAAGTTCAGTGTGAAGTGCTCCTGCTACGAGGGCTGGGTCTTGGAGCCTGACGGGGAAAGCTGCCGCAGTCTGG
Seq A exon
ATCCCTTCAAACCGTTCATCATCTTCTCCAACCGCCACGAGATCAGGCGCATTGACCTTCACAAGGGGGACTACAGCGTCCTAGTGCCTGGCCTGCGCAACACTATTGCCCTGGACTTCCACCTCAGCCAGAGTGCCCTCTACTGGACCGACGTGGTAGAGGACAAGATCTACCGTGGGAAACTCCTGGACAACGGAG
Seq C2 exon
CCCTGACCAGCTTTGAGGTGGTGATTCAGTATGGCTTGGCCACACCAGAGGGCCTGGCTGTAGATTGGATTGCAGGCAACATCTACTGGGTGGAGAGCAACCTGGACCAGATCGAAGTGGCCAAGCTGGACGGAACCCTCCGAACCACTCTGCTGGCGGGTGACATTGAGCACCCGAGGGCCATCGCTCTGGACCCTCGGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040249-'58-45,'58-44,59-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(4.7=2.4),PF146701=FXa_inhibition=WD(100=44.6),PF146701=FXa_inhibition=WD(100=41.0)
A:
NO
C2:
PF0005812=Ldl_recept_b=WD(100=59.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCAGATCCAGAGCTACT
R:
CTTCGATCTGGTCCAGGTTGC
Band lengths:
252-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types