DreEX6081659 @ danRer10
Exon Skipping
Gene
ENSDARG00000000796 | nr4a1
Description
nuclear receptor subfamily 4, group A, member 1 [Source:ZFIN;Acc:ZDB-GENE-040704-11]
Coordinates
chr23:32227844-32229709:-
Coord C1 exon
chr23:32228916-32229709
Coord A exon
chr23:32228697-32228826
Coord C2 exon
chr23:32227844-32228007
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCAATAATTCTGTAGCGC
3' ss Score
6.56
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACCCGGGCACGTTTGCTTTGAGCTACCTGGACGAGACGCTGTCCTCTTCGGGTGGGTCAAACTGCTTTGGAAGTCCGGCATCTGCACCGTCTCCCTCCACCCCGGGATACCAGCACATGTCTGCATGGGACAGCACCTTTGGTCCCTGCTCTCCTGACGAGGGTTGCTGGGGTTCTGAGAAGCCTCTGAACCAGGCAGCATCTTTCTTCACATTTGGGCACGTCACGGCTGATGAGCTTTCCCCACTGGGACAGATGCAGTCACAGATCCCAGATCAGGATCCCTTTTCTCATACTCCGCAACATGGTTCTCCACTTCCCTTCAGTCCACTCAGCTTAGAGCAGGGCAGCCGGGATGGATCGGGACTGATGGACGGACACTTGTCTCCTAAAGTGAGGAGCCCCACAGGAAATGAGGGACGCTGCGCCGTGTGCGGAGACAATGCTTCTTGTCAGCATTACGGGGTGCGCACTTGTGAAGGATGCAAAGGCTTTTTCAAG
Seq A exon
CGCACAGTACAGAAGAACGCCAAATATGTTTGTCTCGCCAACAAAGACTGTCCAGTGGATAAAAGGCGGAGAAACAGATGCCAGTTCTGCCGCTTCCAAAAGTGCCTAGCTGTGGGGATGGTGAAGGAAG
Seq C2 exon
TTGTAAGAACAGACAGCCTGAAAGGAAGAAGGGGGCGTCTGCCATCCAAACCCAAAGCTGTTCAGGACTCAGTGTCTGTCTCTTCACCTGTGAACATCATCGCCTCTCTCGTTACTGCCCATATCGACTCAAACCCTGCCAGTGCAAATCTGGACTATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000796-'3-7,'3-5,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.282 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(38.6=10.2)
A:
PF0010513=zf-C4=PD(58.6=93.2)
C2:
PF0010425=Hormone_recep=PU(0.5=1.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACGGACACTTGTCTCCT
R:
GCAGTAACGAGAGAGGCGATG
Band lengths:
250-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]