RnoEX0060868 @ rn6
Exon Skipping
Gene
ENSRNOG00000007607 | Nr4a1
Description
nuclear receptor subfamily 4, group A, member 1 [Source:RGD Symbol;Acc:620029]
Coordinates
chr7:142915498-142917747:+
Coord C1 exon
chr7:142915498-142916372
Coord A exon
chr7:142917165-142917294
Coord C2 exon
chr7:142917596-142917747
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCCCCCCCCCTCCAGCGC
3' ss Score
11.23
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CCAGTGGCTCTGATTACTATGGAAGCCCCTGCTCAGCCCCGTCACCACCTACACCCAACTTCCAGCCATCCCAGCTCTCCCCTTGGGATGGTTCATTTGGCCACTTCTCCCCCAGCCAGACTTATGAAGGCCTTCGGGTATGGACTGAGCAGTTGCCCAAGGCTTCCGGGCCTCCGCCACCTCCAACCTTCTTCTCCTTCAGTCCTCCCACCGGTCCCAGCCCCAGCCTGGCCCAGAGTTCCCTGAAGTTGTTCCCAGCACCAGCCACCCACCAGCTAGGGGAGGGGGAGAGCTATTCCGTGCCAGCCGCTTTCCCGGGCTTGGCACCCACCTCTCCGAACTGTGACACTTCCGGCATTCTGGACGCACCCGTAACCTCCACCAAGGCCCGCAGTGGGTCTTCAGGGGGCAGTGAGGGCCGCTGTGCTGTCTGTGGAGACAACGCTTCGTGCCAGCATTATGGGGTCCGCACCTGTGAGGGCTGCAAAGGCTTCTTCAAG
Seq A exon
CGCACAGTACAGAAAAGTGCCAAGTACATCTGCCTGGCAAACAAGGACTGCCCTGTGGACAAGAGGCGGCGGAACCGCTGCCAGTTCTGTCGCTTCCAGAAGTGCCTGGCTGTGGGCATGGTGAAGGAAG
Seq C2 exon
TTGTCCGGACAGACAGCCTAAAGGGGCGGCGGGGCCGGCTACCTTCAAAACCCAAGCAGCCCCCAGATGCCTCCCCTACCAATCTCCTCACGTCCCTCATTCGAGCACATTTGGACTCCGGGCCTAACACTGCCAAGTTGGACTATTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007607-'11-6,'11-4,13-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.460 A=0.000 C2=0.373
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PU(38.6=9.3)
A:
PF0010513=zf-C4=PD(58.6=93.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGGGAGGGGGAGAGCTATT
R:
TTAGGCTGTCTGTCCGGACAA
Band lengths:
245-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]