DreEX6082764 @ danRer10
Exon Skipping
Gene
ENSDARG00000067801 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chr21:2779618-2781964:-
Coord C1 exon
chr21:2781902-2781964
Coord A exon
chr21:2781698-2781796
Coord C2 exon
chr21:2779618-2779711
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTTTGTGGAACAGACG
3' ss Score
6.67
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
Exon sequences
Seq C1 exon
CTCCTGTGGAAAGTTCCAGACATTGACATGTCCATGTGTATTTTAAAGGGGAAATCTAAAGAG
Seq A exon
ACGGACTGTCGAAACTACATTCGAGTTTTGCAAGTGCTGGATGAAGAACATCTGTATGTTTGCGGGACTCACGCGTTTCAGCCTCTCTGTGATTATCTG
Seq C2 exon
TCTCTGCAAGATTTCCGGCTGCTCGAGAAAGCAGAGGACGGAAGAGGGAAATGTTCCTATGATCCGTCTCAAAGCTTCACCACTGTGATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067801-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
PF0140314=Sema=FE(7.4=100)
C2:
PF0140314=Sema=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCATGTGTATTTTAAAGGGGA
R:
AGTGGTGAAGCTTTGAGACGG
Band lengths:
119-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]