HsaEX6061815 @ hg38
Exon Skipping
Gene
ENSG00000187764 | SEMA4D
Description
semaphorin 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chr9:89393562-89399338:-
Coord C1 exon
chr9:89399276-89399338
Coord A exon
chr9:89396737-89396835
Coord C2 exon
chr9:89393562-89393655
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGCATTTCTCTTCCCTGCAGACA
3' ss Score
11.74
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GTGTATTGGAAGGTCTCAGAAGACAAAAAAGCAAAATGTGCAGAAAAGGGGAAATCAAAACAG
Seq A exon
ACAGAGTGCCTCAACTACATCCGGGTGCTGCAGCCACTCAGCGCCACTTCCCTTTACGTGTGTGGGACCAACGCATTCCAGCCGGCCTGTGACCACCTG
Seq C2 exon
AACTTAACATCCTTTAAGTTTCTGGGGAAAAATGAAGATGGCAAAGGAAGATGTCCCTTTGACCCAGCACACAGCTACACATCCGTCATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187764_MULTIEX1-9/9=8-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(20.6=100)
A:
PF0140314=Sema=FE(33.0=100)
C2:
PF0140314=Sema=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTATTGGAAGGTCTCAGAAGA
R:
TGACGGATGTGTAGCTGTGTG
Band lengths:
151-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains