GgaEX0015966 @ galGal4
Exon Skipping
Gene
ENSGALG00000010697 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chrZ:43474950-43479917:-
Coord C1 exon
chrZ:43479855-43479917
Coord A exon
chrZ:43476244-43476342
Coord C2 exon
chrZ:43474950-43475043
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCTCATCCCTTATTACAGACT
3' ss Score
7.42
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TTGCATTGGAAGGTCACTGAAGATAAAAGGACTAAATGTGCAGTCAAGGGCAAATCAGAACAG
Seq A exon
ACTGAGTGCCGTAATTATGTGCGTGTGCTGCAACAGCTAAATGACACTTTTCTCTACGTGTGTGGTACTAATGCATTTCAGCCAACTTGTGATTACCTG
Seq C2 exon
AATTTAATTTCGTTTGAGCTCGAAGGTAAGAATGAAGATGGTAAAGGCAGATGCCCATTTGATCCTGCTCAAAGTTACACATCTGTAATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010697_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF0086713=XPG_I=FE(21.5=100),PF0140314=Sema=FE(12.3=100)
A:
PF0086713=XPG_I=PD(23.7=66.7),PF0140314=Sema=FE(19.6=100)
C2:
PF0140314=Sema=FE(19.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCATTGGAAGGTCACTGAAGA
R:
TTACAGATGTGTAACTTTGAGCAGGA
Band lengths:
151-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]