DreEX6082899 @ danRer10
Exon Skipping
Gene
ENSDARG00000103554 | notch1a
Description
notch 1a [Source:ZFIN;Acc:ZDB-GENE-990415-173]
Coordinates
chr21:4623978-4626934:-
Coord C1 exon
chr21:4626706-4626934
Coord A exon
chr21:4624809-4625010
Coord C2 exon
chr21:4623978-4624131
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTCCTCCTTTCCAGCTC
3' ss Score
11.25
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
ACCCGTGCAGTAACGGCGGCGTGTGTCAGGACAGGGTCAATGGTTTTGTGTGTGTGTGTTTGGCTGGTTTTCGAGGGGAGCGCTGTGCAGAAGACATTGATGAGTGTGTGAGCGCCCCCTGCAGGAATGGTGGAAACTGCACAGACTGTGTTAACAGCTATACCTGCAGCTGCCCTGCGGGCTTCAGTGGCATCAACTGCGAGATCAACACACCCGACTGCACCGAGAG
Seq A exon
CTCGTGTTTTAACGGTGGGACGTGTGTGGATGGCATCAGCTCGTTCTCCTGCGTGTGTTTGCCGGGATTTACTGGGAATTACTGTCAGCATGATGTGAACGAGTGCGACTCTCGGCCATGTCAGAACGGCGGCTCCTGTCAGGACGGATACGGCACCTATAAATGCACATGTCCACACGGCTACACCGGACTCAACTGCCAG
Seq C2 exon
AGTCTAGTGCGCTGGTGTGACTCGTCTCCCTGTAAGAACGGAGGCTCGTGTTGGCAGCAGGGGGCGTCCTTCACCTGTCAGTGTGCCAGCGGCTGGACTGGCATCTACTGCGACGTGCCTAGTGTCAGCTGTGAGGTCGCTGCCAGACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103554-'24-28,'24-27,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(87.1=35.1),PF0000822=EGF=WD(100=49.4),PF0000822=EGF=PU(9.7=3.9)
A:
PF0000822=EGF=PD(87.1=39.7),PF0000822=EGF=WD(100=45.6)
C2:
PF0000822=EGF=WD(100=59.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTGTGTTTGGCTGGTT
R:
ACTAGGCACGTCGCAGTAGAT
Band lengths:
304-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]