DreEX6083054 @ danRer10
Exon Skipping
Gene
ENSDARG00000044811 | cdk9
Description
cyclin-dependent kinase 9 (CDC2-related kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-321]
Coordinates
chr21:6041989-6045060:+
Coord C1 exon
chr21:6041989-6042160
Coord A exon
chr21:6042543-6042691
Coord C2 exon
chr21:6044167-6045060
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTTATTCTGTATTTTTGTAGGCG
3' ss Score
8.66
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
ATCCTCCACAGAGACATGAAAGCAGCCAATGTCCTGATCACCAGAGATGGTGTCCTGAAGCTGGCTGATTTCGGTCTGGCCCGAGCCTTCAGTTTGGCTAAAAACAGTCAGGGGAATCGCTACACAAATCGGGTGGTCACTCTGTGGTATAGACCGCCTGAACTACTGCTGG
Seq A exon
GCGAGAGAGACTACGGGCCTCCCATAGACCTGTGGGGCGCGGGGTGCATCATGGCGGAGATGTGGACCAGAAGCCCCATCATGCAGGGCAACACAGAGCAGCACCAGCTCACACTCATCAGTCAGCTGTGCGGATCCATCACTCCTGAG
Seq C2 exon
GTCTGGCCGGGTGTGGATAAGAAGTATGAACTGTATCAGAAGATGGAGCTTCCTAAAGGGCAGAAGCGTAAGGTGAAGGACCGGCTGAAGGCGTATGTGAAAGACCCTTACGCTCTGGACCTCATAGACAAACTGCTGGTTCTGGATCCGGCGCAGAGAATTGACAGTGATGACGCTCTCAACCACGACTTCTTCTGGTCCGACCCCATGCCCTCTGACCTCAAAAACATGCTCTCCACACACAACACCTCCATGTTTGAGTATCTAGCCCCGCCCCGCAGAAGAGGTCACATGCCTCAGCAGCCGGCCAATCAGAACAGAAACCCAGCCACCACCAGCCAATCAGAGTTCGACAGGGTCTTCTGATTAATCTGTAATTGGTCGAGGAGAAAGAGACTTATTTAAATGACTAAATATACATTTCAGCACATCTTGGCTTGGAAATCCAGGCAGATGCATAGAAATCCTGGAGTTTACCATCTGCACTCACTATTGTAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044811-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.264
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.1=100)
A:
PF0006920=Pkinase=FE(16.4=100)
C2:
PF0006920=Pkinase=PD(21.5=52.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGCTGGCTGATTTCGGT
R:
ATGAGGTCCAGAGCGTAAGGG
Band lengths:
243-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]