GgaEX0006904 @ galGal3
Exon Skipping
Gene
ENSGALG00000005045 | CDK9_CHICK
Description
NA
Coordinates
chr17:5523319-5526831:-
Coord C1 exon
chr17:5526660-5526831
Coord A exon
chr17:5526438-5526586
Coord C2 exon
chr17:5523319-5525260
Length
149 bp
Sequences
Splice sites
3' ss Seq
TACAGAGCACCTCTGTTTAGGGG
3' ss Score
1.54
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATCTTGCATCGAGATATGAAAGCTGCAAACGTTCTGATCACGCGGGATGGAGTCCTGAAGCTTGCAGACTTTGGGCTGGCTCGAGCTTTCAGCCTGGCTAAGAACAGCCAGCCGAACCGCTACACCAACCGGGTCGTGACTCTGTGGTATCGGCCGCCGGAGCTGCTGCTAG
Seq A exon
GGGAGCGGGACTACGGGCCCCCCATTGACCTCTGGGGTGGAGGCTGCATCATGGCAGAGATGTGGACCCGCAGCCCCATCATGCAGGGGAACACGGAGCAGCACCAGCTCACCCTCATTAGCCAGCTCTGCGGATCCATCACACCAGAG
Seq C2 exon
GTCTGGCCGAATGTGGATAAGTACGAGCTGTACCAGAAGCTGGAGCTCCCCAAGGGCCAGAAGCGCAAGGTGAAGGATCGCCTGAAGGCCTACGTCAAGGACCCCTATGCGCTCGACCTCATCGACAAGCTGCTGGTGCTGGACCCGGCCCAACGCATCGACAGCGATGATGCGCTGAACCACGACTTCTTCTGGTCAGACCCCATGCCCTCGGACCTCAAAAACATGCTGTCCACCCACAACCAGTCCATGTTCGAGTACCTGGCCCCGCCACGCAGGCGGGGTGGGCACATGCCTCAGCAGCCAGCAAACCAGGGCAGGAACCCTGCGGCTACCAACCAGACTGAATTTGACAGGGTGTTTTGAGCAGGGTCCCGGCTGGGCTGCTCTGCGGGATGCGTTGAGCAGGGACATCTCAGTGGGATCTCTCTTTCTGGTCAGGGACTTCCTTCAAGGCCAAGTGCCTGGTGGCTTTACCTGAGCTCTGCCCTCCCCTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005045_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.298
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.2=100)
A:
PF0006920=Pkinase=FE(16.5=100)
C2:
PF0006920=Pkinase=PD(21.2=51.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAAACGTTCTGATCACGC
R:
ATAGGGGTCCTTGACGTAGGC
Band lengths:
258-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]