RnoEX0019468 @ rn6
Exon Skipping
Gene
ENSRNOG00000022586 | Cdk9
Description
cyclin-dependent kinase 9 [Source:RGD Symbol;Acc:1359638]
Coordinates
chr3:11742266-11744390:-
Coord C1 exon
chr3:11744219-11744390
Coord A exon
chr3:11743913-11744061
Coord C2 exon
chr3:11742266-11743146
Length
149 bp
Sequences
Splice sites
3' ss Seq
CGGTACCCTCTTCTTCTCAGGAG
3' ss Score
6.77
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
ATCCTGCACAGGGACATGAAGGCTGCCAACGTGCTCATTACCCGAGATGGGGTCCTAAAGCTGGCAGATTTTGGGCTGGCTCGCGCCTTCAGCCTAGCTAAGAATAGCCAGCCCAACCGATACACCAACCGTGTGGTGACATTGTGGTACCGACCTCCGGAGCTCCTGCTCG
Seq A exon
GAGAGCGGGACTACGGCCCGCCCATTGACCTGTGGGGTGCTGGGTGCATCATGGCAGAGATGTGGACCCGCAGCCCCATCATGCAGGGCAACACAGAGCAGCACCAGCTTGCCCTCATCAGCCAGCTCTGTGGCTCCATCACTCCAGAG
Seq C2 exon
GTGTGGCCAAACGTGGACAAGTATGAGCTGTTCGAAAAGCTGGAACTGGTCAAGGGCCAGAAGCGGAAGGTGAAGGACCGTCTGAAGGCCTACGTCCGGGACCCCTATGCTCTGGACCTCATTGACAAGCTGCTGGTGCTGGACCCTGCACAGCGGATTGACAGTGATGATGCCCTCAACCATGACTTCTTCTGGTCGGACCCCATGCCCTCGGACCTCAAGGGCATGCTGTCTACTCACTTGACGTCTATGTTTGAGTACCTGGCCCCACCACGACGGAAGGGTAGCCAGATCACCCAGCAGTCCACCAACCAGAGCCGAAATCCCGCCACTACCAACCAGACGGAATTTGAACGTGTCTTCTGAGGCTGTCGCTGGCCGGTGTTCTTAGGTTAGGGGTGGATTGCTTCTGCTCTGACTTGCATGAACATGTGACATGATGGGACGTTTGAGATTTTCTCCTCCAGTACATATCAACTCCACCCTGGCGCTGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022586-'7-11,'7-7,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.207
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(19.2=100)
A:
PF0006920=Pkinase=FE(16.5=100)
C2:
PF0006920=Pkinase=PD(21.2=51.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGGCAGATTTTGGGCT
R:
CCAGCAGCTTGTCAATGAGGT
Band lengths:
252-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]