DreEX6083084 @ danRer10
Exon Skipping
Gene
ENSDARG00000012593 | col5a1
Description
procollagen, type V, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-041105-6]
Coordinates
chr21:6787968-6797583:+
Coord C1 exon
chr21:6787968-6788080
Coord A exon
chr21:6790195-6790263
Coord C2 exon
chr21:6797350-6797583
Length
69 bp
Sequences
Splice sites
3' ss Seq
AACACTCTCCTATTTTACAGAGC
3' ss Score
8.91
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTGAATACTGGATTGATCCCAACCAGGGCTGCTCCAGAGACTCATTCAAAGTGTACTGTAACTTCACAGCAGGTGGAGAGAGCTGCATCTTCCCCGATAAAAAGAGCGAAGGG
Seq A exon
AGCAAAATGGCTCGCTGGCCCAAAGACAGTCCAGGCACATGGTATAGTCGCTACAAGAGAGGGTCAATG
Seq C2 exon
CTCTCGTATGTGGATGCGGAGGGCAATGCCATCGGTGTGGTGCAGATGACGTTCCTGCGTTTGCTCAGTGCCACGGCCCGGCAGAACCTCACCTACAACTGTTACCAGTCTGTGGCCTGGCACGACCAAGACCAGGACTCTTACGATAAAGCCATCCGCTTCCTGGGCTCCAATGACGAGGAGATGTCTTACGATAATAACCCGTACATCAGAGCCGTAGTCGACGGCTGCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012593-'67-70,'67-68,70-70=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
PF0141013=COLFI=FE(17.5=100)
A:
PF0141013=COLFI=FE(10.4=100)
C2:
PF0141013=COLFI=FE(36.8=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGCATCTTCCCCGATA
R:
AAGAGTCCTGGTCTTGGTCGT
Band lengths:
177-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]