DreEX6083116 @ danRer10
Exon Skipping
Gene
ENSDARG00000100657 | egfl7
Description
EGF-like-domain, multiple 7 [Source:ZFIN;Acc:ZDB-GENE-040429-2]
Coordinates
chr21:7683140-7685238:-
Coord C1 exon
chr21:7685113-7685238
Coord A exon
chr21:7684925-7685037
Coord C2 exon
chr21:7683140-7683235
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTGTATTGCGTGTTTTACAGGAC
3' ss Score
10.38
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAGGAGAGTGTGTGTTGGTGATGTCTGGAGTCGTCGCGTGTCTTACAGCACAGAGTCTTTTCTTCAGCCTGTACACAAACCCTACATCACCATGTGCCAAAACCACCGCATGTGCAGCACGTACAA
Seq A exon
GACCATCTACAAGGTTTCTTATAGGCAGGTGAGCAGAGCAGCTCCTAATCTACAAATTTACCCAGAATGCTGTCCGGGGTGGAGGCGCATGCATTCACACAACTGCAACCAAG
Seq C2 exon
CGGTATGTGAACAGTCTTGTGCAAACGGAGGCTCGTGTGTAAGGCCCAATCACTGTGCCTGTCTGAGAGGATGGACAGGACGATTCTGCCAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100657-'5-3,'5-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(56.8=97.7)
A:
PF075468=EMI=PD(41.9=79.5),PF079748=EGF_2=PU(11.8=10.3)
C2:
PF079748=EGF_2=PD(85.3=87.9),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAGTGTGTGTTGGTGA
R:
TTTGGCAGAATCGTCCTGTCC
Band lengths:
219-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]