GgaEX1021777 @ galGal4
Exon Skipping
Gene
ENSGALG00000002420 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr17:7750051-7751162:-
Coord C1 exon
chr17:7751040-7751162
Coord A exon
chr17:7750838-7750950
Coord C2 exon
chr17:7750051-7750146
Length
113 bp
Sequences
Splice sites
3' ss Seq
GCCCCCTCTCTGCATTGCAGGAC
3' ss Score
10.1
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CCGCAGGACCTGTGCTGCAGAGCCGCGGAGCCGCACAGCCACCCACACCGAGTCCCACGTGCAGCCTGTGTACCTGCCCTACCTCACCACCTGCCAGGGCCACCGCCTGTGCAGCACCTACAG
Seq A exon
GACCATCTACAAGGTTGCCTACCGGCAGGTGTACAAACAGGTACCCCAGCCTGTGGCCTCGTGCTGTCCTGGCTGGAGCAGAACCAGCAGCTACGAGCTCAGCTGCAACACAG
Seq C2 exon
CTCTGTGCCAGGTGCCGTGCCAGAATGGTGGCCGCTGCTCCTTCCCTGGAAGATGTGCCTGCCCTCCCGGCTGGATGGGGCCTTCCTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420_MULTIEX1-2/4=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(57.7=97.6)
A:
PF075468=EMI=PD(40.8=74.4),PF079748=EGF_2=PU(9.1=7.7)
C2:
PF079748=EGF_2=PD(87.9=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCACCCACACCGAG
R:
GCAGGAAGGCCCCATCCAG
Band lengths:
178-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]