GgaEX1021777 @ galGal3
Exon Skipping
Gene
ENSGALG00000002420 | EGFL7
Description
NA
Coordinates
chr17:8433328-8434439:-
Coord C1 exon
chr17:8434317-8434439
Coord A exon
chr17:8434115-8434227
Coord C2 exon
chr17:8433328-8433423
Length
113 bp
Sequences
Splice sites
3' ss Seq
GCCCCCTCTCTGCATTGCAGGAC
3' ss Score
10.1
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CCGCAGGACCTGTGCTGCAGAGCCGCGGAGCCGCACAGCCACCCACACCGAGTCCCACGTGCAGCCTGTGTACCTGCCCTACCTCACCACCTGCCAGGGCCACCGCCTGTGCAGCACCTACAG
Seq A exon
GACCATCTACAAGGTTGCCTACCGGCAGGTGTACAAACAGGTACCCCAGCCTGTGGCCTCGTGCTGTCCTGGCTGGAGCAGAACCAGCAGCTACGAGCTCAGCTGCAACACAG
Seq C2 exon
CTCTGTGCCAGGTGCCGTGCCAGAATGGTGGCCGCTGCTCCTTCCCTGGAAGATGTGCCTGCCCTCCCGGCTGGATGGGGCCTTCCTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(57.7=97.6)
A:
PF075468=EMI=PD(40.8=74.4),PF079748=EGF_2=PU(9.1=7.7)
C2:
PF079748=EGF_2=PD(87.9=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCACCCACACCGAG
R:
GCAGGAAGGCCCCATCCAG
Band lengths:
178-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]