DreEX6083906 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17152802-17205257:+
Coord C1 exon
chr21:17152802-17152854
Coord A exon
chr21:17156248-17156388
Coord C2 exon
chr21:17205136-17205257
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTCTATTGATTGTCTACAGGAT
3' ss Score
9.41
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTCTGCTCTATAAACCAGTGGACAGAGTGACCCGGAGCACGCTTGTTTTGCAT
Seq A exon
GATCTTCTAAAACACACCCCCTCCAGTCACCCAGATTACCCGCTCCTGCAGGACGCCCTTCGTATCTCACAAAACTTCCTGTCCAGCATTAACGAAGAGAGCACTCCTCGCCGCCAGTCCATGACCGTGAAGAAAGGAGAG
Seq C2 exon
AACCGTCAGCTGTTGAAGGATGGCTTTATGGTGGAACTTGTCGAAGGAGCTCGAAAACTACGCCATGTTTTTCTCTTCACTGACCTCCTGCTCTGTGCCAAACTGAAGAAACTGATTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'10-11,'10-10,11-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.191 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(9.0=100)
A:
PF0062115=RhoGEF=PD(16.4=66.0)
C2:
PF0016924=PH=PU(23.6=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTCTATAAACCAGTGGACAGA
R:
CCAATCAGTTTCTTCAGTTTGGCA
Band lengths:
171-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]