RnoEX0014497 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14453960-14463673:-
Coord C1 exon
chr20:14463621-14463673
Coord A exon
chr20:14461381-14461521
Coord C2 exon
chr20:14453960-14454081
Length
141 bp
Sequences
Splice sites
3' ss Seq
GGTCTTCCCACCGGGAACAGGAC
3' ss Score
3.43
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTCTGCTCTACAAACCTGTGGACCGGGTGACGAGGAGCACACTAGTCCTTCAC
Seq A exon
GACTTGCTAAAGCACACTCCATCCAGCCATCCCGACCATTCCCTGCTGCAAGATGCCCTCCGCATCTCTCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGGCAGTCCATGACCGTGAAAAAAGGAGAG
Seq C2 exon
CACCGGCAGCTGCTGAAGGATAGCTTCATGGTGGAGCTGGTGGAGGGGGCCCGCAAGCTGCGTCACATCTTCCTGTTCACTGACCTGCTCCTCTGCACCAAGCTGAAGAAACAAAGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'9-11,'9-8,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.234 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(9.0=100)
A:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
C2:
PF0016924=PH=FE(24.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTACAAACCTGTGGACCG
R:
CCTCCACTTTGTTTCTTCAGCT
Band lengths:
171-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]