GgaEX6014157 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8599903-8609662:-
Coord C1 exon
chr15:8609610-8609662
Coord A exon
chr15:8609133-8609273
Coord C2 exon
chr15:8599903-8600024
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCTTGTGTTCTTGGTGGCAGGAT
3' ss Score
6.5
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTCTGCTATACAAGCCAGTGGATCGAGTGACTCGCAGCACACTTGTACTGCAT
Seq A exon
GATTTACTCAAGCACACTCCAGTGAGCCACCCTGATCATCCACTCCTGCAGGATGCCCTGCGGATCTCGCAGAACTTCCTTTCCAGCATCAATGAGGAGATCACTCCTCGTCGGCAGTCCATGACTGTAAAGAAGGGGGAG
Seq C2 exon
CACCGGCAGCTCCTGAAGGACAGCTTCATGGTGGAGCTCGTTGAGGGGGCTCGCAAACTACGTCACGTCTTTCTTTTTACTGATCTGTTCCTGTGTGCCAAGCTCAAGAAGCAGATTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'22-16,'22-14,23-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.181 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(9.0=100)
A:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
C2:
PF0016924=PH=FE(24.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCCAGTGGATCGAGTGA
R:
TTCTTGAGCTTGGCACACAGG
Band lengths:
154-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]