DreEX6084148 @ danRer10
Exon Skipping
Gene
ENSDARG00000011671 | pde6b
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
Coordinates
chr21:20319822-20324800:+
Coord C1 exon
chr21:20319822-20320712
Coord A exon
chr21:20322736-20322888
Coord C2 exon
chr21:20324711-20324800
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGACTTTGTTTTCGCTGTAGGAC
3' ss Score
10.22
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTACCTGAACTGGGCTGGAAGATCCCAAGATGAGCGTCAAAAAAGAAGATGTGGAGAAGTTCCTGGATGGAAATCCAGATTTCACCAAAACCTACTTTGACAAGAAGCTCAAACCTGGTGCTGTGGCCTCAATCATGCGAGTGCCCGAGTCTAAAGTGGACATGGACAGTTTTAAGGAGATCGTCTCGGTGGAAGAGGGAGCAATTTTCTACGATCTCATCACAGACATGCAGGAGAACGTCAACATGGAGAAGGTGATTTTTAAGATTTTGAAGAGAATCAGCGCTCTGATTCATGCGGACCGCTGCAGTCTCTTCATGTATCGGCAGAGGAACGGCATTGCCGAATTGGCCACACGTCTCTTCAACGTTAATAAAGACTCAGAGCTGGATGATTGCGTGGTAGCTCCAGACTCTGAGATCGTCTTCCCTCTGGACATCGGGATAGTTGGACATGTGGCTCAGACCAAGAAACAAGTCAATGTGAAGGACGTTACACAG
Seq A exon
GACAGTCACTTCAGCACATTCGTTGATGAGCTTACTGAATACACCACACACAACCTCCTGGCTGCGCCTATTATGAATGGAAAAGATGTAGTAGCTGTGATCATGGCTGTCAACAAGACCACCGGACCCCATTTCACAGATGAGGATATGGAT
Seq C2 exon
CTTTTTTTAAAGTATCTCAAAGTTGGCTCTCTGAACCTGAAGATTTTTCATCTGAGCTACCTTCACAACTGTGAGACGCGTAAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011671-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(59.9=54.1)
A:
PF0159021=GAF=FE(35.2=100)
C2:
PF0159021=GAF=PD(2.8=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCCACACGTCTCTTCAAC
R:
TGTCCTTTACGCGTCTCACAG
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]