GgaEX6050538 @ galGal4
Exon Skipping
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53331012-53335140:-
Coord C1 exon
chrZ:53334579-53335140
Coord A exon
chrZ:53331452-53331604
Coord C2 exon
chrZ:53331012-53331101
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTAAATTCTCCTTTGAACAGTGT
3' ss Score
7.21
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TTATGAAAATTTAGGAACGACATCAGAAATAAGAGTGCTTCTTGCATAGACCACATCATTGGACTACTACAGGATCCAGGACATTCACAATGAGCATTAGTGAAGACGACGTGGAGAAGTTTCTTGATGGCAACCCTGCTTTTGCCAAGCAATACTTTGAGAAGAAACTGAAAACAGAGTCCTGTGATGACAATGAAAGTGAAATTCTCTTTGAGTTGATACAAGACATGCAAGAAAGCATCAACATGGAGAAAGTTGTATTCAAGACTTTGAGAAGAATCAGGTCCCTTATTCATGCCGATCGCTGTAGTCTTTTCATGTACAGGCAAAGAAACGGCACACCTGAACTGGCAACAAGGCTTTTCAACATTCAAGAGGGAAGCACGCTGGAGGAATGCCTGGTTTCCCCAGACTGCGAGATAGTCTACCCGCTGGACTTAGGCATTGTGGGCTATGTTGCGCAAACCAAGAAAACCATGAACATCAAGGATGTCAGCGAG
Seq A exon
TGTCCCCAGTTCAGTTCATTTGTTGATGAGCTCACCGACTACACTACAAAAAGCATCCTTGCAACACCCATCTTGAATGGCAAAGATCTAGTTGCTGTCATTTTGGCTATTAATAAGCTGAACGGCCCATTCTTCACCAACTCTGATGAAACA
Seq C2 exon
CTTTTCCTGAAGTACCTGAATTTTGCTTCCTTAAACCTGAAAATTTATCACTTGAGTTATCTTCACAACTGTGAGACTCGAAGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(56.7=62.0)
A:
PF0159021=GAF=FE(33.3=100)
C2:
PF0159021=GAF=PD(8.0=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACGGCACACCTGAACTG
R:
GCCTCTTCGAGTCTCACAGTTG
Band lengths:
258-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]