MmuEX6019424 @ mm9
Exon Skipping
Gene
ENSMUSG00000029491 | Pde6b
Description
phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide [Source:MGI Symbol;Acc:MGI:97525]
Coordinates
chr5:108817410-108833186:+
Coord C1 exon
chr5:108817410-108817926
Coord A exon
chr5:108832339-108832491
Coord C2 exon
chr5:108833097-108833186
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTTCCCACCACAGTGT
3' ss Score
9.22
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GAGAAAGCCCCGGGCACAGCAGCAGGAACACCATGAGCCTCAGTGAGGAACAGGTACGCAGCTTCCTGGATGGGAACCCCACGTTTGCCCATCAATACTTTGGGAAGAAGTTGAGCCCTGAAAATGTGGCAGGGGCCTGTGAAGATGGTTGGCTGGCGGACTGTGGCAGCCTGCGAGAGCTGTGCCAGGTGGAAGAGAGTGCAGCACTTTTTGAACTGGTGCAGGACATGCAGGAGAGTGTCAATATGGAACGTGTGGTCTTCAAGATCCTGCGGCGCCTCTGCACCATCCTGCATGCCGACCGCTGCAGCCTCTTTATGTACCGCCAGCGCAATGGCATAGCTGAACTTGCTACGCGGCTCTTCAGCGTGCAGCCTGACAGCCTTCTGGAGGATTGCCTGGTGCCCCCTGACTCTGAGATCGTCTTCCCCCTGGACATTGGGATTGTGGGCCATGTGGCTCAGACCAAGAAGATGATAAACGTGCAGGATGTGGCAGAG
Seq A exon
TGTCCCCACTTCAGCTCATTCGCCGATGAGCTCACCGACTATGTGACAAAGAACATTTTGTCCACACCAATCATGAATGGCAAAGATGTCGTGGCTGTGATCATGGCAGTGAATAAACTGGATGGCCCATGCTTCACGAGTGAAGATGAAGAT
Seq C2 exon
GTTTTCACGAAGTACCTGAATTTTGCTACATTAAACCTGAAGATCTATCACCTAAGCTACCTCCACAACTGTGAGACACGCAGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029491-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(56.7=54.5)
A:
PF0159021=GAF=FE(33.3=100)
C2:
PF0159021=GAF=PD(8.0=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCTGAACTTGCTACGCGG
R:
CGTGTCTCACAGTTGTGGAGG
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: